IL_4ZER_016

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_016 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.052

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4ZER|1|1A|U|629
4ZER|1|1A|U|630
4ZER|1|1A|A|631
4ZER|1|1A|A|632
4ZER|1|1A|G|633
*
4ZER|1|1A|C|643
4ZER|1|1A|G|644
4ZER|1|1A|G|645
4ZER|1|1A|A|646
4ZER|1|1A|G|647

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15