IL_4ZER_049

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_049 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.0492

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4ZER|1|1A|G|1365
4ZER|1|1A|C|1366
4ZER|1|1A|A|1367
4ZER|1|1A|A|1368
4ZER|1|1A|U|1369
*
4ZER|1|1A|A|1377
4ZER|1|1A|G|1378
4ZER|1|1A|C|1379

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 1W

50S ribosomal protein L22

Chain 1X

50S ribosomal protein L23