IL_4ZER_078

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4ZER|1|1A|C|2077, 4ZER|1|1A|A|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_078 not in the Motif Atlas

Homologous match to IL_7RQB_079

Geometric discrepancy: 0.0695

The information below is about IL_7RQB_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4ZER|1|1A|A|2076
4ZER|1|1A|C|2077
4ZER|1|1A|G|2078
4ZER|1|1A|A|2079
*
4ZER|1|1A|U|2623
4ZER|1|1A|C|2624
4ZER|1|1A|U|2625
4ZER|1|1A|A|2626
4ZER|1|1A|U|2627

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1W

50S ribosomal protein L22

Chain 1y

Onc112