IL_4ZER_084

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_084 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3324

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4ZER|1|1A|G|2132
4ZER|1|1A|C|2133
4ZER|1|1A|G|2134
4ZER|1|1A|U|2135
4ZER|1|1A|A|2136
4ZER|1|1A|G|2137
4ZER|1|1A|G|2138
4ZER|1|1A|A|2139
4ZER|1|1A|U|2140
4ZER|1|1A|A|2141
4ZER|1|1A|G|2142
*
4ZER|1|1A|C|2200
4ZER|1|1A|C|2201

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains