IL_4ZER_085

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_085 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.159

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4ZER|1|1A|G|2146
4ZER|1|1A|G|2147
4ZER|1|1A|A|2148
4ZER|1|1A|G|2149
*
4ZER|1|1A|C|2183
4ZER|1|1A|G|2184
4ZER|1|1A|C|2185
4ZER|1|1A|C|2186
4ZER|1|1A|G|2187
4ZER|1|1A|G|2188
4ZER|1|1A|U|2189
4ZER|1|1A|G|2190
4ZER|1|1A|A|2191
4ZER|1|1A|A|2192
4ZER|1|1A|A|2193
4ZER|1|1A|U|2194
4ZER|1|1A|A|2195
4ZER|1|1A|C|2196

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains