IL_4ZER_086

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4ZER|1|1A|U|2154

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_086 not in the Motif Atlas

Homologous match to IL_7RQB_087

Geometric discrepancy: 0.1844

The information below is about IL_7RQB_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4ZER|1|1A|C|2151
4ZER|1|1A|U|2152
4ZER|1|1A|G|2153
4ZER|1|1A|U|2154
4ZER|1|1A|G|2155
4ZER|1|1A|A|2156
4ZER|1|1A|A|2157
4ZER|1|1A|C|2158
*
4ZER|1|1A|G|2177
4ZER|1|1A|G|2178
4ZER|1|1A|G|2179
4ZER|1|1A|A|2180
4ZER|1|1A|G|2181

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains