IL_4ZER_110

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_110 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0577

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4ZER|1|1A|U|2857
4ZER|1|1A|G|2858
4ZER|1|1A|U|2859
4ZER|1|1A|A|2860
4ZER|1|1A|A|2861
4ZER|1|1A|G|2862
*
4ZER|1|1A|U|2875
4ZER|1|1A|U|2876
4ZER|1|1A|G|2877
4ZER|1|1A|A|2878
4ZER|1|1A|G|2879

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19

Chain 1a

Small subunit ribosomal RNA; SSU rRNA