IL_4ZER_124
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 4ZER|1|1a|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4ZER_124 not in the Motif Atlas
- Geometric match to IL_4LFB_009
- Geometric discrepancy: 0.1333
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4ZER|1|1a|G|148
4ZER|1|1a|A|149
4ZER|1|1a|C|150
4ZER|1|1a|A|151
4ZER|1|1a|A|152
4ZER|1|1a|C|153
*
4ZER|1|1a|G|168
4ZER|1|1a|C|169
4ZER|1|1a|U|170
4ZER|1|1a|A|171
4ZER|1|1a|A|172
4ZER|1|1a|U|173
4ZER|1|1a|C|174
Current chains
- Chain 1a
- 16s ribosomal RNA
Nearby chains
- Chain 1t
- 30S ribosomal protein S20
Coloring options: