IL_4ZER_134
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGACG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4ZER_134 not in the Motif Atlas
- Homologous match to IL_6CZR_130
- Geometric discrepancy: 0.1295
- The information below is about IL_6CZR_130
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.3
- Basepair signature
- cWW-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4ZER|1|1a|G|446
4ZER|1|1a|G|447
4ZER|1|1a|A|448
4ZER|1|1a|C|449
4ZER|1|1a|G|450
*
4ZER|1|1a|C|483
4ZER|1|1a|G|484
4ZER|1|1a|G|485
4ZER|1|1a|U|486
4ZER|1|1a|A|487
4ZER|1|1a|C|488
Current chains
- Chain 1a
- 16s ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1p
- 30S ribosomal protein S16
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