IL_4ZER_189

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4ZER|1|2A|U|504, 4ZER|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_189 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0552

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4ZER|1|2A|G|481
4ZER|1|2A|A|482
4ZER|1|2A|A|483
4ZER|1|2A|C|484
*
4ZER|1|2A|G|496
4ZER|1|2A|A|497
4ZER|1|2A|G|498
4ZER|1|2A|U|499
4ZER|1|2A|G|500
4ZER|1|2A|A|501
4ZER|1|2A|A|502
4ZER|1|2A|A|503
4ZER|1|2A|U|504
4ZER|1|2A|A|505
4ZER|1|2A|G|506
4ZER|1|2A|A|507
4ZER|1|2A|G|508
4ZER|1|2A|C|509

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24