IL_4ZER_193

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4ZER|1|2A|G|801, 4ZER|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_193 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.046

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4ZER|1|2A|G|674
4ZER|1|2A|A|675
4ZER|1|2A|A|676
4ZER|1|2A|A|677
4ZER|1|2A|C|678
*
4ZER|1|2A|G|799
4ZER|1|2A|A|800
4ZER|1|2A|G|801
4ZER|1|2A|A|802
4ZER|1|2A|U|803
4ZER|1|2A|A|804
4ZER|1|2A|G|805
4ZER|1|2A|C|806

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15