IL_4ZER_211

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_211 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1059

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4ZER|1|2A|C|1004
4ZER|1|2A|C|1005
4ZER|1|2A|C|1006
4ZER|1|2A|C|1007
4ZER|1|2A|C|1008
4ZER|1|2A|A|1009
4ZER|1|2A|A|1010
4ZER|1|2A|G|1011
*
4ZER|1|2A|C|1150
4ZER|1|2A|G|1151

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2N

50S ribosomal protein L13

Chain 2U

50S ribosomal protein L20