IL_4ZER_252

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4ZER|1|2A|C|2055, 4ZER|1|2A|C|2612, 4ZER|1|2A|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_252 not in the Motif Atlas

Homologous match to IL_7RQB_079

Geometric discrepancy: 0.1031

The information below is about IL_7RQB_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4ZER|1|2A|A|2054
4ZER|1|2A|C|2055
4ZER|1|2A|G|2056
4ZER|1|2A|A|2057
*
4ZER|1|2A|U|2611
4ZER|1|2A|C|2612
4ZER|1|2A|U|2613
4ZER|1|2A|A|2614
4ZER|1|2A|U|2615

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22

Chain 2y

Onc112