IL_4ZER_260

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4ZER|1|2A|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_260 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3452

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4ZER|1|2A|G|2110
4ZER|1|2A|C|2111
4ZER|1|2A|G|2112
4ZER|1|2A|U|2113
4ZER|1|2A|A|2114
4ZER|1|2A|G|2115
4ZER|1|2A|G|2116
4ZER|1|2A|A|2117
4ZER|1|2A|U|2118
4ZER|1|2A|A|2119
4ZER|1|2A|G|2120
*
4ZER|1|2A|C|2178
4ZER|1|2A|C|2179

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains