IL_4ZER_262

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_262 not in the Motif Atlas

Homologous match to IL_7RQB_086

Geometric discrepancy: 0.208

The information below is about IL_7RQB_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4ZER|1|2A|G|2124
4ZER|1|2A|G|2125
4ZER|1|2A|A|2126
4ZER|1|2A|G|2127
*
4ZER|1|2A|C|2161
4ZER|1|2A|G|2162
4ZER|1|2A|C|2163
4ZER|1|2A|C|2164
4ZER|1|2A|G|2165
4ZER|1|2A|G|2166
4ZER|1|2A|U|2167
4ZER|1|2A|G|2168
4ZER|1|2A|A|2169
4ZER|1|2A|A|2170
4ZER|1|2A|A|2171
4ZER|1|2A|U|2172
4ZER|1|2A|A|2173
4ZER|1|2A|C|2174

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains