IL_4ZER_324

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4ZER|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_324 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1076

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4ZER|1|2a|G|683
4ZER|1|2a|A|684
4ZER|1|2a|G|685
4ZER|1|2a|U|686
4ZER|1|2a|A|687
4ZER|1|2a|G|688
*
4ZER|1|2a|C|699
4ZER|1|2a|G|700
4ZER|1|2a|C|701
4ZER|1|2a|A|702
4ZER|1|2a|G|703
4ZER|1|2a|A|704
4ZER|1|2a|U|705
4ZER|1|2a|A|706
4ZER|1|2a|C|707

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11