IL_4ZER_330

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4ZER|1|2a|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_330 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.0939

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4ZER|1|2a|G|933
4ZER|1|2a|C|934
4ZER|1|2a|A|935
*
4ZER|1|2a|U|1380
4ZER|1|2a|U|1381
4ZER|1|2a|C|1382
4ZER|1|2a|C|1383
4ZER|1|2a|C|1384

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2x

Transfer RNA; tRNA