IL_4ZER_335

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_335 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1515

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

4ZER|1|2a|G|1050
4ZER|1|2a|C|1051
4ZER|1|2a|U|1052
*
4ZER|1|2a|G|1206
4ZER|1|2a|2MG|1207
4ZER|1|2a|C|1208

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2n

30S ribosomal protein S14 type Z