IL_4ZSN_143

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGCGUAGGAUAG*CCUG

Length

17 nucleotides

Bulged bases

4ZSN|1|RA|G|2112, 4ZSN|1|RA|U|2113, 4ZSN|1|RA|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZSN_143 not in the Motif Atlas

Geometric match to IL_4K27_003

Geometric discrepancy: 0.3794

The information below is about IL_4K27_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4ZSN|1|RA|C|2108
4ZSN|1|RA|U|2109
4ZSN|1|RA|G|2110
4ZSN|1|RA|C|2111
4ZSN|1|RA|G|2112
4ZSN|1|RA|U|2113
4ZSN|1|RA|A|2114
4ZSN|1|RA|G|2115
4ZSN|1|RA|G|2116
4ZSN|1|RA|A|2117
4ZSN|1|RA|U|2118
4ZSN|1|RA|A|2119
4ZSN|1|RA|G|2120
*
4ZSN|1|RA|C|2178
4ZSN|1|RA|C|2179
4ZSN|1|RA|U|2180
4ZSN|1|RA|G|2181

Current chains

Chain RA

23S rRNA

Nearby chains