IL_4ZSN_206

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZSN_206 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0697

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4ZSN|1|XA|G|887
4ZSN|1|XA|G|888
4ZSN|1|XA|A|889
4ZSN|1|XA|G|890
4ZSN|1|XA|U|891
4ZSN|1|XA|A|892
4ZSN|1|XA|C|893
4ZSN|1|XA|G|894
*
4ZSN|1|XA|U|905
4ZSN|1|XA|G|906
4ZSN|1|XA|A|907
4ZSN|1|XA|A|908
4ZSN|1|XA|A|909
4ZSN|1|XA|C|910

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17