IL_5A2Q_045

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

5A2Q|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

116

Unit IDs

5A2Q|1|2|G|924
5A2Q|1|2|G|925
5A2Q|1|2|A|926
5A2Q|1|2|C|927
*
5A2Q|1|2|G|1014
5A2Q|1|2|U|1015
5A2Q|1|2|U|1016
5A2Q|1|2|U|1017
5A2Q|1|2|U|1018

Current chains

Chain 2

18S RRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN US15

Chain b

RIBOSOMAL PROTEIN ES27