IL_5A2Q_049
3D structure
- PDB id
- 5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 5A2Q|1|2|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02471.1
- Basepair signature
- cWW-tSS-L-tSH-tSS-tHS-tHS-cWW
- Number of instances in this motif group
- 41
Unit IDs
5A2Q|1|2|G|952
5A2Q|1|2|C|953
5A2Q|1|2|U|954
5A2Q|1|2|A|955
5A2Q|1|2|G|956
*
5A2Q|1|2|C|967
5A2Q|1|2|U|968
5A2Q|1|2|U|969
5A2Q|1|2|G|970
5A2Q|1|2|G|971
5A2Q|1|2|A|972
5A2Q|1|2|C|973
5A2Q|1|2|C|974
Current chains
- Chain 2
- 18S RRNA
Nearby chains
- Chain B
- RIBOSOMAL PROTEIN ES1
- Chain O
- RIBOSOMAL PROTEIN US11
Coloring options: