IL_5A2Q_053

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

116

Unit IDs

5A2Q|1|2|C|1098
5A2Q|1|2|G|1099
5A2Q|1|2|A|1100
5A2Q|1|2|U|1101
*
5A2Q|1|2|G|1131
5A2Q|1|2|C|1132
5A2Q|1|2|A|1133
5A2Q|1|2|G|1134

Current chains

Chain 2

18S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN US2

Chain B

RIBOSOMAL PROTEIN ES1

Chain N

RIBOSOMAL PROTEIN US15

Chain R

RIBOSOMAL PROTEIN ES17

Chain a

RIBOSOMAL PROTEIN ES26