IL_5A2Q_097

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGAAAG*UUAGUAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59721.1

Basepair signature

cWW-bif-tSH-tHW-cSH-R-tHW-bif-cWW

Number of instances in this motif group

2

Unit IDs

5A2Q|1|3|C|69
5A2Q|1|3|A|70
5A2Q|1|3|G|71
5A2Q|1|3|A|72
5A2Q|1|3|A|73
5A2Q|1|3|A|74
5A2Q|1|3|G|75
*
5A2Q|1|3|U|91
5A2Q|1|3|U|92
5A2Q|1|3|A|93
5A2Q|1|3|G|94
5A2Q|1|3|U|95
5A2Q|1|3|A|96
5A2Q|1|3|U|97
5A2Q|1|3|G|98

Current chains

Chain 3

HCV IRES

Nearby chains

Chain F

RIBOSOMAL PROTEIN US7

Chain Z

RIBOSOMAL PROTEIN ES25