Motif IL_59721.1 Version IL_59721.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 2-14 | 3-13 | 4-12 | 5-9 | 6-9 | 7-8 | 11-12 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_012 | 4V9F | 0.0000 | 0 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | 0 | LSU rRNA | C | 290 | C | 291 | G | 292 | A | 293 | C | 294 | C | 295 | G | 296 | * | C | 355 | C | 356 | A | 357 | G | 358 | U | 359 | A | 360 | C | 361 | G | 362 | cWW | ncWB | tSH | tHW | cBW | cWW | cSH | |
| 2 | IL_5A2Q_097 | 5A2Q | 0.4653 | 0 | 3 | IRES | C | 69 | A | 70 | G | 71 | A | 72 | A | 73 | A | 74 | G | 75 | * | U | 91 | U | 92 | A | 93 | G | 94 | U | 95 | A | 96 | U | 97 | G | 98 | cWW | tSH | tHW | tHW | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGACCG*CCAGUACG | 1 |
| CAGAAAG*UUAGUAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGACC*CAGUAC | 1 |
| AGAAA*UAGUAU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge (1)
- (1)
- Basepair signature
- cWW-bif-tSH-tHW-cSH-R-tHW-bif-cWW
- Heat map statistics
- Min 0.47 | Avg 0.23 | Max 0.47
Coloring options: