IL_5A8L_002

3D structure

PDB id

5A8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human eRF1 and the hCMV nascent peptide in the translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A8L_002 not in the Motif Atlas

Geometric match to IL_7RQB_009

Geometric discrepancy: 0.1594

The information below is about IL_7RQB_009

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

5A8L|1|A|G|4363
5A8L|1|A|G|4364
*
5A8L|1|A|U|4405
5A8L|1|A|C|4406
5A8L|1|A|C|4407

Current chains

Chain A

28S RIBOSOMAL RNA

Nearby chains