IL_5A8L_003

3D structure

PDB id

5A8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human eRF1 and the hCMV nascent peptide in the translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A8L_003 not in the Motif Atlas

Geometric match to IL_1KFO_002

Geometric discrepancy: 0.1391

The information below is about IL_1KFO_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5A8L|1|A|G|4364
5A8L|1|A|C|4365
5A8L|1|A|U|4366
*
5A8L|1|A|G|4403
5A8L|1|A|A|4404
5A8L|1|A|U|4405

Current chains

Chain A

28S RIBOSOMAL RNA

Nearby chains

Chain Q

EUKARYOTIC RELEASE FACTOR ERF1