IL_5A8L_009

3D structure

PDB id

5A8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human eRF1 and the hCMV nascent peptide in the translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5A8L|1|B|C|1331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A8L_009 not in the Motif Atlas

Homologous match to IL_4V88_450

Geometric discrepancy: 0.2274

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

5A8L|1|B|U|1329
5A8L|1|B|G|1330
5A8L|1|B|C|1331
5A8L|1|B|A|1332
5A8L|1|B|U|1333
*
5A8L|1|B|A|1498
5A8L|1|B|U|1499
5A8L|1|B|G|1500

Current chains

Chain B

HUMAN 18S RIBOSOMAL RNA

Nearby chains

Chain Q

EUKARYOTIC RELEASE FACTOR ERF1

Chain R

MRNA