IL_5A8L_011

3D structure

PDB id

5A8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human eRF1 and the hCMV nascent peptide in the translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

5A8L|1|B|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A8L_011 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3388

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5A8L|1|B|C|1708
5A8L|1|B|G|1709
5A8L|1|B|C|1710
5A8L|1|B|U|1711
*
5A8L|1|B|A|1822
5A8L|1|B|A|1823
5A8L|1|B|A|1824
5A8L|1|B|A|1825
5A8L|1|B|G|1826

Current chains

Chain B

HUMAN 18S RIBOSOMAL RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Q

EUKARYOTIC RELEASE FACTOR ERF1

Chain R

MRNA