IL_5A9Z_016

3D structure

PDB id

5A9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5A9Z|1|AA|G|801||||P_1, 5A9Z|1|AA|G|805||||P_1

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A9Z_016 not in the Motif Atlas

Geometric match to IL_7A0S_015

Geometric discrepancy: 0.2098

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

5A9Z|1|AA|G|674||||P_1
5A9Z|1|AA|A|675||||P_1
5A9Z|1|AA|A|676||||P_1
5A9Z|1|AA|A|677||||P_1
5A9Z|1|AA|C|678||||P_1
*
5A9Z|1|AA|G|799||||P_1
5A9Z|1|AA|A|800||||P_1
5A9Z|1|AA|G|801||||P_1
5A9Z|1|AA|A|802||||P_1
5A9Z|1|AA|U|803||||P_1
5A9Z|1|AA|A|804||||P_1
5A9Z|1|AA|G|805||||P_1
5A9Z|1|AA|C|806||||P_1

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AM

50S ribosomal protein L15