IL_5A9Z_031

3D structure

PDB id

5A9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A9Z_031 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.2396

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

5A9Z|1|AA|C|1004||||P_1
5A9Z|1|AA|C|1005||||P_1
5A9Z|1|AA|C|1006||||P_1
5A9Z|1|AA|C|1007||||P_1
5A9Z|1|AA|C|1008||||P_1
5A9Z|1|AA|A|1009||||P_1
5A9Z|1|AA|A|1010||||P_1
5A9Z|1|AA|G|1011||||P_1
*
5A9Z|1|AA|C|1150||||P_1
5A9Z|1|AA|G|1151||||P_1

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L13

Chain AR

50S ribosomal protein L20