IL_5A9Z_129
3D structure
- PDB id
- 5A9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5A9Z_129 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.2023
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04211.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5A9Z|1|BA|U|605||||P_1
5A9Z|1|BA|G|606||||P_1
5A9Z|1|BA|A|607||||P_1
5A9Z|1|BA|A|608||||P_1
5A9Z|1|BA|A|609||||P_1
5A9Z|1|BA|G|610||||P_1
5A9Z|1|BA|A|611||||P_1
5A9Z|1|BA|C|612||||P_1
*
5A9Z|1|BA|G|628||||P_1
5A9Z|1|BA|G|629||||P_1
5A9Z|1|BA|G|630||||P_1
5A9Z|1|BA|G|631||||P_1
5A9Z|1|BA|A|632||||P_1
5A9Z|1|BA|G|633||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BH
- 30S ribosomal protein S4
- Chain BL
- 30S ribosomal protein S8
- Chain BT
- 30S ribosomal protein S16
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