IL_5A9Z_140

3D structure

PDB id

5A9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5A9Z|1|BA|C|934||||P_1

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A9Z_140 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.2628

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5A9Z|1|BA|G|933||||P_1
5A9Z|1|BA|C|934||||P_1
5A9Z|1|BA|A|935||||P_1
*
5A9Z|1|BA|U|1380||||P_1
5A9Z|1|BA|U|1381||||P_1
5A9Z|1|BA|C|1382||||P_1
5A9Z|1|BA|C|1383||||P_1
5A9Z|1|BA|C|1384||||P_1

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BK

30S ribosomal protein S7

Chain BM

30S ribosomal protein S9