IL_5A9Z_174
3D structure
- PDB id
- 5A9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5A9Z_174 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.2401
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
5A9Z|1|BA|U|580||||P_1
5A9Z|1|BA|G|581||||P_1
5A9Z|1|BA|U|582||||P_1
5A9Z|1|BA|A|583||||P_1
5A9Z|1|BA|G|584||||P_1
*
5A9Z|1|BA|U|757||||P_1
5A9Z|1|BA|G|758||||P_1
5A9Z|1|BA|A|759||||P_1
5A9Z|1|BA|G|760||||P_1
5A9Z|1|BA|G|761||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BL
- 30S ribosomal protein S8
- Chain BP
- 30S ribosomal protein S12
- Chain BS
- 30S ribosomal protein S15
- Chain BU
- 30S ribosomal protein S17
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