IL_5AA0_025
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GA*UCC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_025 not in the Motif Atlas
- Geometric match to IL_7TZS_003
- Geometric discrepancy: 0.2634
- The information below is about IL_7TZS_003
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- Minor groove platform related
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
5AA0|1|AA|G|862||||P_1
5AA0|1|AA|A|863||||P_1
*
5AA0|1|AA|U|913||||P_1
5AA0|1|AA|C|914||||P_1
5AA0|1|AA|C|915||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AN
- 50S ribosomal protein L16
- Chain AW
- 50S ribosomal protein L25
Coloring options: