IL_5AA0_034
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 5AA0|1|AA|U|1033||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_034 not in the Motif Atlas
- Homologous match to IL_4WF9_041
- Geometric discrepancy: 0.282
- The information below is about IL_4WF9_041
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
5AA0|1|AA|G|1031||||P_1
5AA0|1|AA|A|1032||||P_1
5AA0|1|AA|U|1033||||P_1
5AA0|1|AA|G|1034||||P_1
*
5AA0|1|AA|C|1121||||P_1
5AA0|1|AA|G|1122||||P_1
5AA0|1|AA|C|1123||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AH
- 50S ribosomal protein L6
- Chain AN
- 50S ribosomal protein L16
- Chain Af
- 50S ribosomal protein L36
Coloring options: