IL_5AA0_040
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CGAUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 5AA0|1|AA|U|1211||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_040 not in the Motif Atlas
- Homologous match to IL_7RQB_047
- Geometric discrepancy: 0.3125
- The information below is about IL_7RQB_047
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 28
Unit IDs
5AA0|1|AA|C|1208||||P_1
5AA0|1|AA|G|1209||||P_1
5AA0|1|AA|A|1210||||P_1
5AA0|1|AA|U|1211||||P_1
5AA0|1|AA|G|1212||||P_1
5AA0|1|AA|A|1213||||P_1
5AA0|1|AA|A|1214||||P_1
5AA0|1|AA|G|1215||||P_1
*
5AA0|1|AA|U|1234||||P_1
5AA0|1|AA|G|1235||||P_1
5AA0|1|AA|G|1236||||P_1
5AA0|1|AA|A|1237||||P_1
5AA0|1|AA|G|1238||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AR
- 50S ribosomal protein L20
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