IL_5AA0_044
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_044 not in the Motif Atlas
- Homologous match to IL_7A0S_049
- Geometric discrepancy: 0.3068
- The information below is about IL_7A0S_049
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
5AA0|1|AA|U|1357||||P_1
5AA0|1|AA|G|1358||||P_1
5AA0|1|AA|A|1359||||P_1
5AA0|1|AA|A|1360||||P_1
5AA0|1|AA|G|1361||||P_1
*
5AA0|1|AA|C|1370||||P_1
5AA0|1|AA|G|1371||||P_1
5AA0|1|AA|U|1372||||P_1
5AA0|1|AA|A|1373||||P_1
5AA0|1|AA|G|1374||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AD
- 50S ribosomal protein L2
- Chain Aa
- 50S ribosomal protein L31
- Chain Ad
- 50S ribosomal protein L34
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