IL_5AA0_115

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

5AA0|1|BA|U|244||||P_1, 5AA0|1|BA|C|280||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AA0_115 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.2427

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5AA0|1|BA|C|242||||P_1
5AA0|1|BA|A|243||||P_1
5AA0|1|BA|U|244||||P_1
5AA0|1|BA|C|245||||P_1
5AA0|1|BA|A|246||||P_1
5AA0|1|BA|G|247||||P_1
*
5AA0|1|BA|C|277||||P_1
5AA0|1|BA|G|278||||P_1
5AA0|1|BA|A|279||||P_1
5AA0|1|BA|C|280||||P_1
5AA0|1|BA|G|281||||P_1
5AA0|1|BA|A|282||||P_1
5AA0|1|BA|C|283||||P_1
5AA0|1|BA|G|284||||P_1

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S12

Chain BU

30S ribosomal protein S17