IL_5AA0_132
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 5AA0|1|BA|A|665||||P_1
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AA0_132 not in the Motif Atlas
- Homologous match to IL_4LFB_029
- Geometric discrepancy: 0.2552
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
5AA0|1|BA|G|662||||P_1
5AA0|1|BA|A|663||||P_1
5AA0|1|BA|G|664||||P_1
5AA0|1|BA|A|665||||P_1
5AA0|1|BA|G|666||||P_1
*
5AA0|1|BA|U|740||||P_1
5AA0|1|BA|G|741||||P_1
5AA0|1|BA|G|742||||P_1
5AA0|1|BA|U|743||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BJ
- 30S ribosomal protein S6
- Chain BS
- 30S ribosomal protein S15
- Chain BV
- 30S ribosomal protein S18
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