IL_5ADY_010

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AACU*GGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_010 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1839

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5ADY|1|B|A|155
5ADY|1|B|A|156
5ADY|1|B|C|157
5ADY|1|B|U|158
*
5ADY|1|B|G|168
5ADY|1|B|G|169
5ADY|1|B|U|170
5ADY|1|B|U|171

Current chains

Chain B

23S RRNA

Nearby chains

Chain X

50S RIBOSOMAL PROTEIN L28