IL_5ADY_018

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUG*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_018 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.224

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

5ADY|1|B|G|533
5ADY|1|B|U|534
5ADY|1|B|G|535
*
5ADY|1|B|U|558
5ADY|1|B|G|559
5ADY|1|B|C|560

Current chains

Chain B

23S RRNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L13

Chain Q

50S RIBOSOMAL PROTEIN L20

Chain R

50S RIBOSOMAL PROTEIN L21