IL_5ADY_041
3D structure
- PDB id
- 5ADY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of the 50S ribosome subunit bound with HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GCUAAG*CGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 5ADY|1|B|A|1156
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ADY_041 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2167
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5ADY|1|B|G|997
5ADY|1|B|C|998
5ADY|1|B|U|999
5ADY|1|B|A|1000
5ADY|1|B|A|1001
5ADY|1|B|G|1002
*
5ADY|1|B|C|1153
5ADY|1|B|G|1154
5ADY|1|B|A|1155
5ADY|1|B|A|1156
5ADY|1|B|G|1157
5ADY|1|B|C|1158
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain A
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- 50S RIBOSOMAL PROTEIN L20
- Chain R
- 50S RIBOSOMAL PROTEIN L21
- Chain Z
- 50S RIBOSOMAL PROTEIN L30
Coloring options: