IL_5ADY_048
3D structure
- PDB id
- 5ADY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of the 50S ribosome subunit bound with HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 5ADY|1|B|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5ADY_048 not in the Motif Atlas
- Geometric match to IL_5J7L_284
- Geometric discrepancy: 0.2098
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5ADY|1|B|C|1043
5ADY|1|B|C|1044
5ADY|1|B|C|1045
5ADY|1|B|A|1046
5ADY|1|B|G|1047
5ADY|1|B|A|1048
5ADY|1|B|C|1049
5ADY|1|B|A|1050
5ADY|1|B|G|1051
*
5ADY|1|B|U|1108
5ADY|1|B|C|1109
5ADY|1|B|G|1110
5ADY|1|B|A|1111
5ADY|1|B|G|1112
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain 7
- 50S RIBOSOMAL PROTEIN L10
- Chain G
- 50S RIBOSOMAL PROTEIN L6
Coloring options: