IL_5ADY_053

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5ADY|1|B|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_053 not in the Motif Atlas

Geometric match to IL_7A0S_043

Geometric discrepancy: 0.2703

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

5ADY|1|B|C|1208
5ADY|1|B|U|1209
5ADY|1|B|G|1210
5ADY|1|B|C|1211
5ADY|1|B|G|1212
5ADY|1|B|A|1213
5ADY|1|B|A|1214
5ADY|1|B|G|1215
*
5ADY|1|B|U|1234
5ADY|1|B|G|1235
5ADY|1|B|G|1236
5ADY|1|B|A|1237
5ADY|1|B|G|1238

Current chains

Chain B

23S RRNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L20