IL_5ADY_062

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

5ADY|1|B|U|1559

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_062 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2496

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5ADY|1|B|G|1432
5ADY|1|B|A|1433
5ADY|1|B|A|1434
5ADY|1|B|G|1435
*
5ADY|1|B|C|1557
5ADY|1|B|C|1558
5ADY|1|B|U|1559
5ADY|1|B|G|1560
5ADY|1|B|C|1561

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2