IL_5ADY_157

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCUUG*CUGGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ADY_157 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3259

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5ADY|1|B|G|2083
5ADY|1|B|C|2084
5ADY|1|B|U|2085
5ADY|1|B|U|2086
5ADY|1|B|G|2087
*
5ADY|1|B|C|2232
5ADY|1|B|U|2233
5ADY|1|B|G|2234
5ADY|1|B|G|2235
5ADY|1|B|U|2236

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2

Chain X

50S RIBOSOMAL PROTEIN L28