IL_5AFI_019
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 5AFI|1|A|G|801||||P_1, 5AFI|1|A|G|805||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_019 not in the Motif Atlas
- Homologous match to IL_7RQB_018
- Geometric discrepancy: 0.0746
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
5AFI|1|A|G|674||||P_1
5AFI|1|A|A|675||||P_1
5AFI|1|A|A|676||||P_1
5AFI|1|A|A|677||||P_1
5AFI|1|A|C|678||||P_1
*
5AFI|1|A|G|799||||P_1
5AFI|1|A|A|800||||P_1
5AFI|1|A|G|801||||P_1
5AFI|1|A|A|802||||P_1
5AFI|1|A|U|803||||P_1
5AFI|1|A|A|804||||P_1
5AFI|1|A|G|805||||P_1
5AFI|1|A|C|806||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
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