IL_5AFI_024
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5AFI|1|A|G|776||||P_1, 5AFI|1|A|A|788||||P_1, 5AFI|1|A|A|789||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_024 not in the Motif Atlas
- Homologous match to IL_5J7L_265
- Geometric discrepancy: 0.0888
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5AFI|1|A|G|775||||P_1
5AFI|1|A|G|776||||P_1
5AFI|1|A|G|777||||P_1
*
5AFI|1|A|C|787||||P_1
5AFI|1|A|A|788||||P_1
5AFI|1|A|A|789||||P_1
5AFI|1|A|U|790||||P_1
5AFI|1|A|C|791||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
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