IL_5AFI_043
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAG*CGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_043 not in the Motif Atlas
- Homologous match to IL_5J7L_283
- Geometric discrepancy: 0.1629
- The information below is about IL_5J7L_283
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5AFI|1|A|G|1038||||P_1
5AFI|1|A|A|1039||||P_1
5AFI|1|A|A|1040||||P_1
5AFI|1|A|G|1041||||P_1
*
5AFI|1|A|C|1114||||P_1
5AFI|1|A|G|1115||||P_1
5AFI|1|A|G|1116||||P_1
5AFI|1|A|C|1117||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
Coloring options: